| Version | Change log |
| PyMOL 3.1.7.2 Mar 5, 2026 |
Fixed crashes that occur with ligand cartoon preset and other procedures involving atoms with indeterminate coordinate values. Fixed Gizmos not appearing in transparency mode 3 Fixed interpolation bars not updating when summary keyframes are moved in the Timeline Fixed Timeline programs not loading their custom, overridden animation values Fixed transparency and lighting for semi-transparent CGO spheres Fixed Numpy 2.0 compatibility issues when loading hypothesis.xyz files. Fixed crash when choosing “volume_color” when making movie (not currently available) Fixed some crashes when cut, copying, pasting keyframes and programs to tracks. Fixed off-by-one state storing in state-related programs Fixed sped-up or slowed-down clips not colliding properly with other Timeline elements Fixed transformed objects not being ray-traced sometimes Fixed Scene keyframes inadvertently adding onto a state track for object targets. |
| PyMOL 3.1.5.1 May 9, 2025 |
Fixed issue where files could not be opened from MacOS finder. `.sdfgz` now importable (`.sdf.gz` was already importable) Fixed issue where non-ASCII characters in `.cms` files could not be read |
| PyMOL 3.1.3.1 Feb 6, 2025 |
Fixed issue where files could not be opened from MacOS finder. `.sdfgz` now importable (`.sdf.gz` was already importable) Fixed issue where non-ASCII characters in `.cms` files could not be read |
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